COLLECTION

Resources for Malaria Molecular Surveillance

RESULTS REPORTING & VISUALIZATION

Results reporting

Genetic Report Card

MalariaGEN

The GRC contains genetic data from malaria parasites, which is derived from the analysis of patient blood samples. Includes information on:

  • Species co-infections
  • Complexity of infection
  • Sample barcodes
  • Drug resistance genes and haplotypes

Results visualization

GRC Mapper

MalariaGEN Resource Centre, Sanger Institute

Interactive web-apps for quick exploration of the published malaria surveillance Genetic Report Card data.

Malaria Surveillance Dashboard - Ghana

WACCBIP

Data on antimalarial resistance markers, pfhrp2/3 gene deletions, copy number comparisons and insecticide resistance mutations. 

MARC SE-Africa Dashboard

Mitigating Antimalarial Resistance Consortium for Southern and Eastern Africa

Interactive dashboard that compiles and visualizes data from multiple sources, offering an up-to-date overview of resistance patterns and treatment efficacy in Southern and Eastern Africa.

Microreact

Open data visualization and sharing for genomic epidemiology

Nextstrain

Open-source project to harness the scientific and public health potential of pathogen genome data 

Data & analysis standards

Proposed standards for targeted amplicon data and metadata

PlasmoGenEpi

Standardized format for microhaplotype data to facilitate data sharing, including development of appropriate repositories, along with transparency and reproducibility of analysis.

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